mismatch allele problem PLINK
Hello,
I'm training to perform GWAS with PLINK. I'm trying to do the PCA with this script 1. When I run it the console tells me
Warning: 648750 --score file entries were skipped due to mismatching allele codes. Error: No valid variants in --score file.
I can't understand where is the issue. Do you have any ideas?
Thank you,
Luca
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luca.sclisizzo •
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luca.sclisizzo •
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