Hello,

I want to run RepeatMasker to identify repeats in my files, which are very large (>7 GB each sample). However, RepeatMasker only loads a small part of them at a time. Of course, I can split the files into parts, as I did, but then the question arises: how do I make the results of the analysis of each subsequent piece complement the results of the previous piece of the file?

Here is the command I used:

RepeatMasker -no_is -pa 4 -a -div 43 -lib <repeat_library.fasta> <input_sequence_01.fasta> -dir <output_directory>