Problem with SRA
2 answers
SRA has a feature to see how reads align to the tree of life. Most reads of this sample are bacteria.
Why do you think there is mouse there?
https://trace.ncbi.nlm.nih.gov/Traces/?view=run_browser&acc=SRR957824&display=analysis
However, when submitted to SRA, it comes up as "mouse".
What does that mean? I can see an entry that is E. coli for that accession : https://www.ncbi.nlm.nih.gov/sra/?term=SRR957824
Log in to answer this question.
More posts like this
-
KEGG orthology ID to E. coli gene symbol
written by sooni •
-
No counts in my RNA-seq data
written by demoraesdiogo2017 •
-
Unable to find this E coli genome
written by pomodoro_sinensis •
-
How can I query NCBI SRA for purpose of strain typing/profiling?
written by gatheringdusthere •
-
How to process paired end data (using fastq-dump) to get Fw and Rv files
written by 2405592M
-
How can I get a rdotplot file in lastz?
written by biomagician
-
Browsing E.Coli K-12 strain in a genome browser?
written by auryndb
-
Job: PhD position in microbial genomics in National University of Ireland, Galway
written by brennan_fp •
-
Job: PhD position in microbial genomics in National University of Ireland, Galway
written by brennan_fp •
-
Get Ensembl Gene By Species/Strain For E. Coli
written by Jirapong •
