FeatureCounts has duplicate Gene names
While doing RNA seq data analysis after mapping my featurecount data with annotation gtf file .
in almost half cases I found duplication of gene for 2 different ENSEMBLE IDs , now for downstream DESeq2 analysis how will I deal with this duplications ?
Examples of some duplications :
ENSG00000258137.6 GPR84-AS1 82 102 102 116 107 122 61 71 53 56 47 60
ENSG00000258086.1 GPR84-AS1 83 93 96 101 112 100 65 91 65 80 67 91
ENSG00000015479.20 MATR3 198 269 210 239 284 272 178 207 181 140 242 226
ENSG00000280987.4 MATR3 4 7 4 2 5 5 3 8 2 6 2 5
• 1,022 views
•
link
updated
by
GenoMax
•
written
by
Confused_human •
•
written
by
Confused_human •
1 answer
Log in to answer this question.
More posts like this
-
Very low average coverage obtained
written by mail2steff
-
MrBayes Stepping-stone analysis error: DEBUG ERROR: Log likelihood nan after move 'Slider(Ratemulti…
written by klo •
-
CAFE--python_scripts--ValueError: invalid literal for int() with base 10: '6_0'
written by 1165492577 •
-
Error executing process > 'AlignReadsToHost (S3_test)' in AMR++2
written by xxingxrong •
-
Plotting - Coverage Analysyis
written by Gene •
-
DESeq dataset split into 2 subsets?
written by popescuiofelia •
-
heat map and Survival plot
written by Dataminer
-
Strange length of merged paired-end sequencing reads after using BBmerge
written by bioplanet •
-
How to extract trinity gene id
written by Bioinfonext
-
PAMLX yn00 does not issue error message but prints empty files when asked for dN/dS statistics
written by LauferVA
