NCBI entrez-direct C++ Exception EUTILSAPP(CException::eInvalid)
Hi! could someone help me with an error from NCBI?
I have used NCBI entrez-direct via command line smoothly and it has been okay. Today, when I am trying to download clinvar data from NCBI with this command
esearch -db 'clinvar' -query 'MLH1[gene]' | esummary
I got this error
<ERROR>NCBI C++ Exception:
Error: EUTILSAPP(CException::eInvalid) "/pubmed_gen/rbuild/version/20231222/entrez/2.19/src/internal/eutils/eutilsapp/eutilsapp.cpp", line 77: ncbi::EUtilsException::EUtilsException() --- esummary: clinvar: pback220: CDTD_XSLT_Loader::GetData: dtd: Cannot open file: /entrez/local/clinvar/data/Build240129-0945.1/Main//dtdinfo.ini
</ERROR>
Note when I tried to run the above comman without esummary it looks fine. Below the output of without esummary:
<ENTREZ_DIRECT>
<Db>clinvar</Db>
<WebEnv>MCID_65b91f0ba4529546e40be054</WebEnv>
<QueryKey>1</QueryKey>
<Count>5309</Count>
<Step>1</Step>
<Elapsed>3</Elapsed>
</ENTREZ_DIRECT>
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Are you saying that this command used to work before but is not working today?
You could try
This will give you a similar XML output.