snippy-multi bad Id error
I am running snippy multi. This is my command
snippy-multi isolate.tab --ref"/home/sameen/Klebsella/Snippy/reference.fa" --cpus 3 >runme.sh
This is my isolate.tab file
BC0123IDRLAKUS2 /home/sameen/Klebsella/Snippy/contigs/BC0123-IDRL-AKU_S2_assembly.fasta
BL10442IDRLAKUS7 /home/sameen/Klebsella/Snippy/contigs/BL10442-IDRL-AKU_S7_assembly.fasta.
I am using contigs that I got from spade, but the error says bad Id. I did everything to make it work
• 1,090 views
•
link
0 answers
No answers yet.
Log in to answer this question.
Can you try without the quotes?
its giving the same error
Is there an extra period at the end of this line in your file? File is tab delimited?
Just to be explicit