Its possible to merge GTF files from different genome versions so I can assing the seqnames from one ot another
Hello everybody I have two GTF files of two different version of a genome and I like to merge both so I can have the equivalence of the seq names as in the oldest version they were named in the way HSymV2.0_g01.00001_t1 and in the newest they are named in the way NC_079875.1, and I need the gene functional and domain annotations but they are avaiable with the first naming type. is it possible to do?
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Please define how you plan on "merging" these files. It looks like you need more of a rename/name-mapping operation than a merge operation.
Hello I mean if I can assign the old gtf gene ids in the form of
HSymV2.0_g01.00001_t1to the new version gtf file by the genomic coordinates so I can extract GO KEGG PFAM and InterProScan data from the original article of the assembly, I don't know if what I want to do its its rename or re mapping or if it is possible to doSee answers here: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between assemblies
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