This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How can I do GWAS with SNP array result in plink?

Hello, I got some SNP array result data, and I have to do GWAS with it. It is formatted as '.txt', and it is zipped by '.gz'.

I only used the processed map-ped (bim-bed-fam) file, so I'm in very difficult situation.

What I only got looks like below. enter image description here

Each file has the result of each person, so I have several files for several people. Do I have to merge them all first?

Please let me know, how can I do the GWAS with that file.

plink snp gwas array

0 answers

No answers yet.

Log in to answer this question.