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BigWig Compare for ChIP seq data (between input and IP)

Hi Everyone,

I am trying to find the enrichment of protein A on the human rDNA locus using ChIP seq data. After doing the BW comparison between input and IP, negative tracks are retained. I want to remove those negative tracks where it's not enriched, Please provide your insights. For further clearance, I have attached the snap of the track here. Image description: Shows the.BW file and narrow peak file along with an annotated file for rDNA region

bw chip seq

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