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TWAS analysis

Hello,

I wanted to do the TWAS analysis in R. I want to know if any pipeline or package available for performing the twas analysis step by step.

Thank you!

scrna-seq snp twas

1 answer

The FUSION (http://gusevlab.org/projects/fusion/) and MetaXcan (https://github.com/hakyimlab/MetaXcan) may be useful.

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