This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to obtain the gene set of KEGG module

KEGG manually collect the pathway information including biological process and disease development. Each pathway has genes involved in pathway activity. The pathway has several modules with different function. Therefore, How to obtain the gene set of KEGG module enter image description here

r gene-set kegg
• 2,766 views • link
written by xingyu • xingyu

What does "curatelly" mean?

• 0 views • link
written by Ram Ram

Sorry, I made a mistake. I want to express that KEGG manually collect the pathway information including biological process and disease development.

• 0 views • link
written by xingyu • xingyu

You can edit your post and make any changes you desire. Your comment does clarify your meaning, thank you.

• 0 views • link
written by Ram Ram

Thank you very much for your kind comment.

• 0 views • link
written by xingyu • xingyu

2 answers

Use their API

• 0 views • link
written by 5heikki 5heikki

Thank you very much for your suggestion. But I am a green hand for the use of API. Could you tell me the instruction of API use.

• 0 views • link
written by xingyu • xingyu

Follow the link for the instructions. There are many examples there too..

• 0 views • link
written by 5heikki 5heikki

I will try the instructions. Thanks for your sincere comment again.

• 0 views • link
written by xingyu • xingyu

KEGG module gene sets can be found here by clicking on the module of interest. You can then click on individual K numbers to find the gene names.

• 0 views • link
written by Jeremy • Jeremy

Thank you very much for your comment. I also found another page about KEGG module gene sets, just like you. I want to further ask a question how to obtain this gene sets of different KEGG modules.

• 0 views • link
written by xingyu • xingyu

Log in to answer this question.

More posts like this