More posts like this
-
KEGG pathways
written by Blue •Hi I'm new to bioinformatics. I have phenotypic microarray data showing utilized nutrients. I want to create a KEGG Pathway for my bacteria (using annotated …
-
how to match DAVID pathways data obtained from string enrichment?
written by RAVISOMABATTINI •How to co relate the Gene code name found in the Gene cards and String database with the KEGG pathway, GO enrichment, by using the …
-
Difference between KO and ko numbers?
written by deep771992chanda •Hi friends- please forgive me for my silly query. Actually, I was exploring the KEGG pathway database. 1. I could not understand what is the …
-
adopt last KEGG database to do pathway enrichment in humman2
written by zhangdengweihi all, I'm dealing with the metagenomic data using `humann2`, to perform pathway enrichment. And the default database is `metaCyc` for pathway enrichment in `humann2`. …
-
kegg id convertion
written by sara.behrozi7 •how to convert kegg id to gene symbol? i have searched wnt pathway and now i want to convert kegg id to gene symbols i …
-
Crosstalk between KEGG pathways
written by anu014Hello Biostars, I used clusterProfiler for KEGG pathway enrichment. Now I want to do crosstalk over them. I utilized jaccard coefficient in order to measure …
-
Has anyone tried 'ConsensusPathDB-human' database for ontology/pathway analyses?
written by Muha0216 •hi I am currently really confused. I recently submitted my samples for RNA SEQ to a company that not only does the actual running of …
-
Define Number of Gene in Metabolic Pathway
written by naving2uk •Hi, How can we define the number of gene in KEGG human metabolic pathway ? I used KEGG API "Rest": ``` operation = 'list/'; database …
-
KEGG pathway gene list different from the picture
written by bharata1803Hello, I want to map my up/down regulated gene to a pathway and visualize it. I check a pathway from KEGG database: http://www.genome.jp/kegg-bin/show_pathway?hsa04310 and after …
-
Gene Pathway Association File For Kegg
written by Sequencegeek •<p>I am trying to manually calculate the pathway enrichment for some genes. I have downloaded the panther and reactome data files which have the pathway …
It happens.
Tutorial:How To Ask Good Questions On Technical And Scientific Forums