GMT file from eggnog annotation
I've been working with de novo assembled trancriptome of a non-model species and recently I performed an annotation of it using eggnog mapper. Now I wish to use the R package pathwaysPCA, but the input needed is a GMT file, so I would like to know if there is a way to obtain a GMT file from the eggnog annotation files.
Thanks!
• 810 views
•
link
updated
by
leandrovb88 •
•
written
by
jorge.cortes.miranda •
•
written
by
jorge.cortes.miranda •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Help with choosing a model species for Augustus for a de novo assembled genome.
written by Vijith •
-
What alternative method would recommend for conducting gene ontology analysis?
written by mathavanbioinfo
-
Gene Enrichment analysis with EggNog output
written by JirMan •
-
Improving existing genome with new RNA-seq data
written by Dunois •
-
Mapping transcripts to mitogenome
written by wes •
-
Converting an output de-novo transcriptome assembled with Trinity to a .gff3 file
written by Raito92
-
de novo transcriptome assembly of Oxford Nanopore Technologies long reads
written by Alicia •
-
Where to find Drosophila melanogaster de novo transcript assembly data?
written by Peter vH
-
Is it possible that a plant has a KO cathegory associated with human disease?
written by aboutmb •
-
Generating GTF file for de novo assmebled transcriptome
written by EVR
Hi. I am trying to do the same thing. Did you find some way to do it?
Best,