biomaRt Ensembl version 83 (mouse)
Hello,
I'm looking for an old Ensemb release (83) for GRCm38 build:
library(biomaRt)
mouse <- useEnsembl(biomart = "genes", dataset="mmusculus_gene_ensembl", version=83)
Error: Specified Ensembl version is not available.
Use listEnsemblArchives() to view available versions.
Version 83 is not displayed in the list of Ensembl archives ; is there another way to have access to this version?
Thank you!
• 1,086 views
•
link
updated
by
Ram
•
written
by
Marie-Michelle •
•
written
by
Marie-Michelle •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
where to find mouse genome GRCm38/mm10 for biomart R
written by Alewa
-
Get gene names from rs SNP ids for mmusculus_gene_ensembl
written by julian.d.stamp •
-
Biomart mmusculus_gene_ensembl mm39
written by ced.gob.cg •
-
Unable to access ensembl biomart archives via R
written by johntimcham •
-
Forum: Plotting Ensembl gene name changes between versions
written by Corentin
-
why does my biomaRt query return inconsistent dataset lists?
written by adam.faranda
-
BiomaRt: archive version of ensembl not working
written by salamandra
-
Any difference between biomaRt package and biomart tab on the website?
written by M K
-
BioMart up-to-date with NCBI ?
written by lindfors.erno •
-
How To Use Archived Version Of Ensembl In Biomart
written by anneleen.beckers •
I don't think so, at least not through BioMart. Check this table to see which version of ensembl that is the closest that has the assembly you are looking for and use that: https://www.ensembl.org/info/website/archives/assembly.html
Depends what you need. You can browse the archive directly at https://ftp.ensembl.org/pub/release-83/ so maybe what you need can be found there.