More posts like this
-
Conceptual question about open reading frames
written by Daniel •Many publications state that typical way to classify mRNA vs. lncRNA is based off whether they have an open-reading frame, and that typical open-reading frames …
-
Problem with gffcompare
written by Nipan •how to solve this problem related to gffcompare? how to install gffcompare,can someone give step by step command. I'm very new ![enter image description here][1] …
-
How to sort using samtools
written by Nipan •How to rectify the problem? ![enter image description here][1] [1]: /media/images/1f987f7b-2b7d-498c-ba86-931c0a5c
-
Forum: What is your experience with the customer support of Oxford University Press?
written by jiri.hon •We are trying to upgrade the license of our recently accepted *Bioinformatics* paper to Open Access license. However, the communication with the customer service of …
-
Timeline for hg39 human genome?
written by Shicheng GuoHi All, Do we have timeline for human hg39 genome? I ask these questions because I have lots of hg37 data need to transfer to …
-
Aligning to ultra-short reference sequence
written by spaladug •I have set of subject sequences (25 to 40 bps long). My query sequences are 200-300 bp long. I am trying to find the location …
-
Bowtie2 build index
written by rahman.samir33 •Hi, I wanted to know how long it takes to build an index on bowtie2 using hg19. Bowtie2 creates 6 files with suffixes .1.bt2, .2.bt2, …
-
Question about downloading RNA-seq long reads and short reads for the same sample
written by tunlWe need to use RNA-seq long reads and short reads from the same sample to do some comparisons. I was wondering which websites may have …
-
call consensus that could fill gaps in reference by pacbio subreads
written by ant_genome •Hi, everyone! I have a question that how to call a consensus sequence that could fill gaps located in the reference. Whether samtools could do …
-
What Script (Or Program) Should I Use To Filter Low Complexity And Repetitive Reads From Rna-Seq?
written by Geparada<p>Hi! we are going to process some NGS data in order to find splice junctions. The low complexity and repetitive sequences into reads often generates …