Reaction enrichment analysis
Hello community,
when we have gene id we generally use shinygo or david to perform gene enrichment analysis. In my case I have gene id and reactions names and I want to perform reaction enrichment analysis. Is there a tool that permits to do that please.
Thanks,
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dalibenam64 •
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What kind of reaction names? Which type of enrichment analysis do you want to do, over representation analysis or functional scoring systems (or network analysis type) ?
example of reaction names that I have : 10-Formyltetrahydrofolate Lysosomal Transport via Diffusion 11-Deoxycortisol Intracellular Transport 11-Deoxycorticosterone Intracellular Transport 3-Diaminopropane:Oxygen Oxidoreductase (Deaminating) 1-Alpha-Vitamin D-24, 25-Hydroxylase (D2) In general these reactions are found in a recon model i would appreciate it if you give me a tool for each type if it doesn't bother you. thank you in advance