More posts like this
-
read mapping coverage
written by vinita14ramtekey •Hello all, I have whole genome resequencing data of Brassica napus in fq.gz format (PE). I have checked quality of raw reads, did trimming and …
-
BUSCO, Gene duplication
written by lukhanyomakhabane •Hello everyone What tool can someone use to analyze for gene duplication for fungal genome of interest. I have used BUSCO to evaluate genome completeness …
-
how to convert kegg ids to gene names
written by lily •l have a list of genes from rna seq data analysis and I performed gene ontology analysis on them using KOBAS (KOBAS.cbi.pku.edu.cn). the result contains; …
-
extract promoter sequence from whole genome
written by citronxu •Hi there, I'm right now working with Brassica napus, and would like to extract promoter sequence of certain genes on Linux platform. First I look …
-
Brassica napus reference genome
written by dejong.grant •I've generated genome indices via STAR using two *Brassica napus* reference genome sources: BRAD and Ensembl. Both have resulted in complications. The BRAD gff3 varies …
-
How to understand "between_species_paralog" in Ensembl and EnsemblGenomes
written by wangdp123Hi there, I am trying to understand how to define "between_species_paralog" in Ensembl and EnsemblGenomes and found out the definitions here: For Ensembl: (http://www.ensembl.org/info/genome/compara/homology_method.html) > …
-
How to perform GO and Pathway analysis in plant?
written by WhoknowsHi friends, I'm working on a data from shotgun proteomics (**brassica napus** specie). For GO and Pathway analysis I have problem because I could not …
-
Parsing PhyloXML to split gene trees at duplication nodes
written by spiral01Hi, I am new to the PhyloXML format and have a question about parsing files to split gene trees at duplication nodes. I have 9000 …
-
weird species statistics of NR annotation
written by l0o0Hi, I am doing a denovo rna-seq project of *Brassica alboglabra*. After assembling, I blast the unigene to the NR database. Most of the unigenes …
-
tools to detect age of duplication
written by gurpreet.kaur •What methods could be used to find out the age of duplication event in the plant genome of Arabidopsis thaliana.
Is
bioinformaticsthe best tag you could use for this post? Every single post on this forum is related to bioinformatics, so your tag adds zero value.