Visualize where kmers are on a reference genome · Biostar

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Visualize where kmers are on a reference genome

Hello!

I have a reference genome and a kmer of 7. I ran the kmer and genome through seqkit locate to get all the locations of where the kmer binds to the genome in a text file. Is there a way I can now use this file, or the BED file that is also produced, to visually see where the kmers are binding to the genome?

kmer visualize

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updated 2.9 years ago by Alex Reynolds

• written 2.9 years ago by Carrie •

Did you google "visualize BED file on genome"?

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written 2.9 years ago by Ram

1 answer

Make a bigBed file: Convert a bed file to bigbed

Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/customTrack.html#TRACK

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written 2.9 years ago by Alex Reynolds

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