Long-reads assembly using Miniasm in NanoGalaxy · Biostar

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Long-reads assembly using Miniasm in NanoGalaxy

Hi.

I am trying to assemble long-reads using Miniasm in NanoGalaxy. Before running with Miniasm, I first map the reads via Minimap 2 (all-vs-all option) to generate a PAF file. However, whenever I run the assembly in Miniasm, using default settings, I always get empty tables. Can anyone help me figure out what went wrong? By the way, the assembled contigs will be used for metabarcoding.

assembly galaxy metabarcoding nanopore

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written 2.9 years ago by Cedrick •

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