Associating between results obtained after running Trinity's run_DE_analysis.pl and genes
Hi.
How can one associate between the generic transcript names and the actual genes of the studied organism?
Here are the first few lines of the output file kallisto.gene.counts.matrix.Control_vs_Serum.edgeR.DE_results (which I understood is the relevant one for differential expression analysis):
sampleA sampleB logFC logCPM PValue FDR
TRINITY_DN20_c32_g3 Control Serum 9.23276616667445 12.9356943987126 2.99593148556322e-21 1.20271669487936e-16
TRINITY_DN4_c16_g1 Control Serum 8.63278061282675 10.5525746902278 2.83205795956004e-18 5.68464833932689e-14
TRINITY_DN16_c15_g4 Control Serum 8.1299403156539 12.8442074535907 1.08780718396644e-17 1.32166860920557e-13
I looked at the other output files but didn't find a relevant information.
I got the organism's fasta file of annotated CDSs. Should I use it in blastn to annotate the differential expression results?
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