How to extract gene lists following DEG analysis?
Hello,
After gene read counts, I performed DEseq2 using R software. Then, I filtered my DEG file based on pvalue <0.01 & log2FC > |1|.
Then, I conducted functional annotation based on arabidopsis database.
The result was as below:
Actually, there are almost 30,000 gene annotated. my question is within annotated data, I would like to only extract "photosynthesis-related genes".
How could I achieve this mission?
Thank you.
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hellokwmin •
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hellokwmin •
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You need a definition of photosynthesis-related genes. A brief literature search shows that people have defined such sets in the past. Do you have something specific in mind?