calculating the number of parsimony informative sites on a locus basis
I want to calculate the number of parsimony informative sites for fasta alignments that contain ambiguous bases and missing data (-). Any code out there that will do that?
• 535 views
•
link
written
by
diversitree •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Problem at running Automlsa2
written by muhammadirfanulislambcsir •
-
Fast tool for FASTQ Q30 calculation
written by emma.a •
-
How does vcftools account for missing data when calculating nucleotide diversity?
written by George •
-
How to obtain fasta sequences at only mapped sites
written by diversitree •
-
Difference between total number of reads in fastq file and no of bases/nt sequences in fastq file?
written by Fizzah •
-
Keeping only SNPs
written by safiq713 •
-
How to find total size of regions NOT in bigWig file
written by Rubal
-
Extract and ADD text information
written by flogin
-
Simple way to extract or mask specific sites only from multi-FASTA alignments
written by Kame •
-
Tool for mapping homoplasy onto an existing phylogenetic tree
written by confusedious
