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Detecting CNV's (copy number variation) in haploid yeast cells

Hey all,

I have whole-genome-sequencing data from 22 yeast strains grown in lab evolution experiments. I want to compute copy number variation to see whether a specific gene/chromosome was duplicated throughout the experiment. I am struggling to find a good, well-documented tool for specifically computing CNVs and would love some suggestions.

Thanks a lot, Shahar

cnv sv mapping deep-sequencing
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written by Rezenman • Rezenman

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