Gene set enrichment analysis / Kegg analysis
Hi all,
I recently did differential gene expression of Daphnia magna using DESeq2 in R studio. It was my first time doing the analysis. Now the next step is to conduct Kegg analysis or Gene set enrichment analysis of the differentially expressed genes. The problem is that all the genes are named LOC12345 and I am unable to convert them to entrez or ensemble ids as there is no organism database for Daphnia magna like org.Dm.eg.db. Please let me know if there's any way to get the proper gene names.
I'd really appreciate your input. Thanks!
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Manuel Sokolov Ravasqueira •
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fakeeha •
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fakeeha •
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The number after the LOC is the EntrezID. You can access these entries by the URL https://www.ncbi.nlm.nih.gov/gene/{number}