This is a test version of Biostars. For the public version, visit https://www.biostars.org.
blastp: parameter set

Hi, I am new at bioinforamtic world. I am looking for homology of my target sequences through blastp with Swissport database. My subjects and querry bothfiles are large and expecting a large number of hits as well. Currently, I am running the code-

blastp -query pep.fasta -db /data/swissprot -out blstp.txt -evalue 1e-10 -outfmt "6 qseqid evalue pident ssciname sskingdom stitle" -max_target_seqs 1

I want to have high confidence hits/match to select as target seqs.

What is the best strategy to do it?

blast homologs ouput

0 answers

No answers yet.

Log in to answer this question.