AvgExpression error in seurat: invalid name for slot of class “Assay5”: check.matrix
Hello,
I am trying to generate a heatmap for specific genes in my single cell dataset but I keep getting a weird error. I have previously generated a heatmap with this code before for the same dataset.
This is my code for average expression:
x <- AverageExpression(x, assays = NULL, return.seurat = TRUE)
I keep getting the error:
Counts matrix provided is not sparse. Creating V5 assay in Seurat Object.
Error in initialize(value, ...) :
invalid name for slot of class “Assay5”: check.matrix
Please help
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Does the error message really have stylized quotes (
“...”as opposed to"...")?Yes the message has stylized quotes as in “Assay5”. Can you please help with this?
I haven't used Seurat - I'm sure other users can help you. It's just that it's odd seeing stylized quotes in programming error messages; it means the developer added them on purpose, as most code editors type out simple double quotes.