Giotto problem with Visium spatial transcriptome data in R
Hi,
I am using Giotto in R version 4.3.1 for analyzing Visium spatial transcriptome. I have installed Giotto packages in R and checked the existence of Giotto in R with the tutorial. However, when I need to use some commands like spatFeatPlot2D or detectSpatialCorFeats etc, it always shows that:
Error in spatFeatPlot2D(visium_kidney, expression_values = "scaled", feats = kmtest$feats[1:6], :
could not find function "spatFeatPlot2D"
Could anyone help me to understand and fix the problem?
Thank you!
1 answer
Did you install Giotto or also Giotto Suite? I believe those functions are there https://giottosuite.readthedocs.io/en/latest/index.html
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