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How to make chromVAR plot?

Hi all,

I found an interesting plot in a paper using the tool name chromVAR.
https://www.cell.com/cell-reports/pdf/S2211-1247(19)30666-7.pdf.
However I could not find the code in the Github page of the paper.
https://github.com/sankaranlab/erythroid-profiling Do you know how to make a plot like this from ATAC seq data? Thank you so much!enter image description here

atac-seq
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written by Chris • Chris

This is heatmap/plot which can plot by ComplexHeatmap. You need to prepare your (chromVAR)data to a matrix, then plot the heatmap.

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written by MatthewP MatthewP

Thank you so much for sharing! Would you please explain why they used chromVAR in the legend? I thought the plot use a function in chromVAR tool?

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written by Chris • Chris

Thank you so much! I appreciate it.

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written by Chris • Chris

Would you please confirm the function to make this plot?
enter image description here

Seem it is plotVariability()

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written by Chris • Chris

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