Tutorial: How to use UCSC genome browser to check the transcription factor binding at your favorite gene
Hi all, I just made this video showing you how to use UCSC genome browser https://genome.ucsc.edu/ to check ChIP-seq data.
Happy Learning!
Tommy
ucsc
transcription
factor
chip-seq
• 2,588 views
•
link
written
by
Ming Tommy Tang
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Tutorial: How to install R and Rstudio on macOS with M3 chip
written by Ming Tommy TangHi Bioinformatics lovers, In this short video, I will show you how to install R and Rstudio on macOS. https://www.youtube.com/watch?v=nRD7VdLACP8 Happy Learning! Tommy
-
Tutorial: 6 tips to stay up to date for bioinformatics
written by Ming Tommy TangHi all, I made this video sharing 6 tips to stay current in bioinformatics from my own experience. https://www.youtube.com/watch?v=ezhzDCxnga0 Happy Learning! Tommy
-
Tutorial: SingleCellExperiment object explained with a real-world example
written by Ming Tommy TangHi all, I made a tutorial explaining what is SingleCellExperiment object and use an example you can follow. Script: https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/08_intro_to_singleCellExperiment.Rmd Video: https://www.youtube.com/watch?v=eTzh6iWPqeQ Happy Learning! Tommy
-
Tutorial: common mistakes in using spreadsheets
written by Ming Tommy TangHi all, I've made a video on common mistakes to avoid in using spreadsheets. https://www.youtube.com/watch?v=D-_C8dQZCVA Slides can be found at https://docs.google.com/presentation/d/1uEF6NOcSKR480MM0QwdZXM1Gs2Q9vI04bt2lsXnP0s0/mobilepresent?slide=id.p Happy Learning! Tommy
-
Tutorial: How to convert gene ids in R
written by Ming Tommy TangHi all, I made this video: https://www.youtube.com/watch?v=OMm6Db6dsiM Download the script at https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/R_tips_08_convert_gene_ids.Rmd Happy Learning! Tommy
-
Tutorial: How to read multiple matrices from GEO into R and make multiple Seurat objects and merge …
written by Ming Tommy TangHi, I saw people asking this question, so I made a video. https://www.youtube.com/watch?v=5e_8wr5Xx_Q Download the script at https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/04_create_seurat_object_from_GEO.Rmd Happy Learning! Tommy
-
Tutorial: Understanding Hierarchical Clustering in R, Distance Measures, and Linkage Methods
written by Ming Tommy TangHi all, I made this video to explain hierarchical clustering in R. https://www.youtube.com/watch?v=KPtucxQC5ew Download the script at https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/R_tips_06_hierarchical_clustering.Rmd Happy Learning! Tommy
-
Tutorial: How to do GSEA in R for RNAseq data
written by Ming Tommy TangHi, I made this video to show you how to do GSEA in R and understand the GSEA plot https://www.youtube.com/watch?v=IKCDQEpuJDA The R script is at …
-
Tutorial: How to read all files into a single dataframe (merge all RNAseq count table)
written by Ming Tommy TangHi all, I made this video to show you how to merge all the count tables into a single dataframe https://www.youtube.com/watch?v=rdbPNYg4g4k Download the script at …
-
Tutorial: How to pre-process scRNAseq data from fastq to count matrix with two lines of code
written by Ming Tommy TangHi! I just made this video. https://www.youtube.com/watch?v=fVtiHHIvG-I and find the script at https://github.com/crazyhottommy/compbio_tutorials/blob/main/scripts/06_scRNseq_two_lines_from_fastq_to_count_matrix.Rmd Happy learning! Tommy
Hi Ming,
Nice video! We wanted to share that we liked the content and say hi on behalf of the UCSC Genome Browser team.
-Lou
Thanks, Lou and the UCSC genome browser team, for making this tool available!