How to plot VDJ clonotyping data in UMAP of Seurat object using Immunarch
Hello, I'm new to Immunarch and I'm trying to plot VDJ information on a Seurat UMAP plot. However, I'm having trouble finding any tutorials or vignettes related to this topic, apart from those mentioning the select_clusters and select_barcodes functions. The plot above is an example from the Immcantation tutorial. Unfortunately, I can't use Immcantation due to difficulties with Docker.
• 1,278 views
•
link
updated
by
Ming Tommy Tang
•
written
by
은서 •
•
written
by
은서 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
use https://www.bioconductor.org/packages/release/bioc/html/scRepertoire.html instead. you can combine the TCR/BCR information to the seurat object and then plot upon UMAP.