Renaming FASTA contig header

I would like to change the long header of the contigs to be shorter. How can I conduct that using one of Galaxy's tools?

Regards

fasta

• 707 views • link

updated 3.2 years ago by Ram

• written 3.2 years ago by adnan.lahuf •

If you want galaxy specific help please ask on their help forum: https://help.galaxyproject.org/

Otherwise there are plenty of threads here that provide pointers. Here is one example: Fasta header trimming

• 0 views • link

written 3.2 years ago by GenoMax

0 answers

No answers yet.

More posts like this

Help understanding best binning practices
written 1.5 years ago by boone5jones •

Hi all, I am working on a virus discovery and virome profiling project. I am interested in quantifying viruses in my samples. So far, my …
Change sample ID in BAM file to cell barcode
written 3.5 years ago by martin.grasshoff •

Hi all. I have a BAM file from one 10X scRNAseq sample. I want to try a tool out which was designed for a different …
How to convert ss to rsid (SNPs)
written 5.6 years ago by mendonca_thiago22 •

Hi everybody! I have a long list of submitted SNPs (ss) and I would like to convert them to rsid nomenclature. I know I can …
Align pacbio subreads against assembled pacbio reads
written 5.7 years ago by wes •

I have a fasta file consists of contigs generated using canu with Pacbio long read sequence. Now I would like to align the pacbio subread …
to identify target genes of miRNAs using psRNATarget
written 5.9 years ago by m.s_tabatabaei •

Hi every one, I am going to predict the target genes of miRNAs using psRNATarget. I am using a genome assembly consisting of long contigs …
Validating Results from NMF Clustering & Consensus clustering
written 7.1 years ago by David_emir

Hi, I am running NMF/Consensus Clustering on my cancer samples and wanted it to cluster the samples into various subgroups, my question is how to …
call consensus that could fill gaps in reference by pacbio subreads
written 9.3 years ago by ant_genome •

Hi, everyone! I have a question that how to call a consensus sequence that could fill gaps located in the reference. Whether samtools could do …
Extract the mapped contig sequences from SAM/BAM file
written 9.4 years ago by BDK_compbio

I have a sam/bam file that contains the mapping of long reads with assembled contigs from short reads. Because of low coverage of long reads, …
Customize fasta headers
written 10.2 years ago by bkvijay.jayaraman •

Hi, I have a fasta file with 300 protein sequences. I intend to construct a phylogenetic tree with it. I would want only the accession …
Genome annotation by RAST
written 11.5 years ago by norhanmahfouz •

Hi, I have used RAST command line tools, namely `find_rnas`, `call_genes` and `svr_assign_using_figfams` for the annotation of my 50+ set of ordered contigs; the output …