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Illumina Genomestudio Cnv And Loh Analysis Pieline

I am doing Illumina SNP array analysis using Illumina Genome Studio software genotyping module. I am new to bioinformatics. Can anyone please help me with a workflow or pipeline for CNV and LOH analysis using Genome Studio software?

illumina snp analysis

Please post a specific question not a generic statement or call for help.

1 answer

I would suggest not limiting yourself to GenomeStudio. Take a look at Partek, dChip, or Biodiscovery's Nexus software for alternatives. There are also several algorithms available via the Bioconductor project.

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