ABO alleles
Hello, I'm setting up an ABO genotyping. I've generated a table with all the allelic variants of this gene and their changes compared to the reference genome. My idea is to extract all the variants using a VCF file and recreate this table for each sample in order to determine the different alleles. The problem lies mainly with the heterozygous patients, as for now I'm manually checking the mutations I have and conducting tests to obtain both alleles. Can someone help me solve this problem?
• 1,059 views
•
link
updated
by
Raony Guimarães
•
written
by
Fernando •
•
written
by
Fernando •
1 answer
You could use a tool such as BOOGIE to infer the ABO alleles using VCF files:
• 0 views
•
link
written
by
Raony Guimarães
Log in to answer this question.
More posts like this
-
vcf procesing for ML antigen prediction
written by Javier •
-
Appropriate statistical test
written by ijlal.hyder2012 •
-
bcftools get allele abundance
written by Fernando •
-
snakemake : associating 2 wildcards for a specific mapping
written by regue.hadrien •
-
bcftools filter doesn't filter variants based on expression
written by Adamo0_91 •
-
Extracting Cumulative (Rare) Allele Frequencies for a Subset of Variants From a VCF
written by maegsul
-
How to change ID of SNP in one file to adjust to the other file?
written by khn
-
Trouble getting KEGG Ortholog Table from K numbers on KEGG webpage
written by MGlenn •
-
Deciding on a Variant Caller
written by newontheblock •
-
Mutalyzer: Multiple hgvs names
written by jan
