merging structural variants from various callers into one vcf file (long read sequencing)
Hi community. I have called structural variants from multiple callers designed for long read sequencing (Sniffles, NanoSV, CuteSV and Svim). Now I want to know is there any way I could merge these calls from all of these callers into one? Thanks.
• 1,068 views
•
link
updated
by
LChart
•
written
by
Shaghayegh •
•
written
by
Shaghayegh •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Troubleshooting an MLPA-confirmed OPA1 exon duplication missing in ONT Long-Read SV callers (cuteSV…
written by Kevin •
-
Short reads to identify stuctural variants
written by priya.bmg •
-
how to choose an efficient filtering threshold to remove shorter and low quality reads before doing…
written by Shaghayegh •
-
VCF file filter for breakpoints
written by EpiExplorer
-
Best tools for calling structural variants from 2 assemblies?
written by changxu.fan
-
Structural variant filtering
written by dominique.massau •
-
How to extract reads that support the structural variants using the vcf file and bam file?
written by Venkatesh Chellappa •
-
Tool: Workflow for structural variants from long read sequencing data
written by WouterDeCoster
-
How to call CNV(copy number variant) in Pacbio ?
written by qincai158 •
-
Visual Representation Of Multiple Genomes?
written by peris
If they output VCF files, you could try ConsensusSV: https://github.com/SFGLab/ConsensuSV-core