This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Pre-processing for Agilent microarray data?

Hi, is there any recommended pre-processing for Agilent microarray data?

I know there're frma and rma for Affymetrix microarray data, but I am not sure about Agilent.

I found a R package called AgiMicroRna but it seems to focus on processing data for analysis with the limma package.

Thank you.

affymetrix microarray gene agilent rna
• 2,251 views • link
updated by 1769mkc 1769mkc • written by survive • survive

Hi, thank you for the reply. Since I'm not familiar with Agilent data, what are the standard way of pre-processing the data? For example, should I be doing background correction?

• 0 views • link
written by survive • survive

That is covered in the linked document when searching "Agilent".

• 0 views • link
written by ATpoint ATpoint

I was also looking for this. So we donot necessarily need the agilient R package to process the data?

• 0 views • link
written by 1769mkc 1769mkc

0 answers

No answers yet.

Log in to answer this question.

More posts like this