promoter analysis
In the outputs of RNA-seq data analysis, we know that there is a list of IDs. Should we do promoter analysis only for those IDs that have real gene names or or we can all IDs to be analyzed?
promoter
analysis
• 882 views
•
link
updated
by
ATpoint
9.1K
• |
written
by
m.esmaeilpour
1
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
No gene name
written by rajdeepboral00 7Hello all, I have used deseq for my data analysis on RNA seq and got a differential gene expression data on the corresponding ensembl ids, …
-
Gene Ontology / Hypothetical proteins
written by Pegasus 13Hi all, I am conducting RNA-seq analysis for a fungal strain (Botrytis cinerea 05.10). Most of the up/down-regulated genes are hypothetical proteins that have no …
-
how to convert kegg ids to gene names
written by lily 0l have a list of genes from rna seq data analysis and I performed gene ontology analysis on them using KOBAS (KOBAS.cbi.pku.edu.cn). the result contains; …
-
promoter analysis with DEG RNA-seq
written by m.esmaeilpour 1Hello. Please, does anyone introduce a websites that are active and do promoter analysis and transcription factor binding sites? My input data is a list …
-
Multiple ensembl gene ID for the same gene name (Symbol), how to deal with this while differential …
written by Swarna Kanchan 1Dear all, I am processing my RNA-seq data, during processing I observed multiple ensembl gene IDs for the same gene name (symbol). I went into …
-
Blast2GO : how to select only transcription factors
written by evafinegan 0Hello, I am using Blast2Go to retrieve the GO terms for a list of genes. I used protein sequences and ran Blast. Then I ran …
-
RNa seq data: GO annotation
written by hnp21 5Hello Biotsrars! I have a question for you about GO annotation of RNA seq data: I have differentially expressed genes (used Edge R to analyze …
-
target selection of differentially expressed miRNAs from NGS data analysis
written by nikhilvgbt 0Well, I have got the differentially expressed miRNAs from NGS data analysis. Since, in this case, I only got the list of miRNA names and …
-
Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcripts?
written by Kristin Muench 65Thanks for taking the time to answer a newcomer's question. I am looking for whether some proteins are expressed in some RNA-Seq data I was …
-
Converting Protein Names To Gene Ids
written by kanwarjag 120<p>I have a proteomic data which has protein names and I want to overlay with RNA-seq data based on gene ids (enterz gene id or …
Define 'promoter analysis' and the question you want to answer.