Cytoscape - metabolite data network analysis · Biostar

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Cytoscape - metabolite data network analysis

I was interested in using Cytoscape to visualize bacterial metabolomics LC-MS data. I first was hoping to try ClueGO/Pedia, is there a way to enter metabolite names or KEGG Identifiers (I have selected KEGG Ontology). If this only takes gene names/IDs, is there another app that I could use for this?

Thank you

cytoscape visualization metabolomics network

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updated 3.3 years ago by scooter

• written 3.3 years ago by alexa.fitzpatrick •

1 answer

Greetings Alexa,

I'm a bit confused. ClueGO and CluePedia are used for enrichment -- not sure how you were planning on using them for metabolomics visualization. I don't know of an ontology of metabolites that's available for enrichment analysis, but one might exist. If you are just looking to visualize your data, perhaps you can explain a bit more what you are trying to portray and we can provide more help.

-- scooter

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written 3.3 years ago by scooter

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