This is a test version of Biostars. For the public version, visit https://www.biostars.org.
ColabFold local heterodimer prediction script making

Hey

I]m writing a simple script (for dimers now - rater heterodimers) for ColabFold local (Release v1.5.0) similar to AlphaFoldPulldown. My motivation is that it is much easier to install and less complicated. And the results are very similar. So far I have implemented the scores: pdockq, mpdockq, basic (iptm, ptm, pLDDT) [by the way, I don't know what exactly 'iptm+ptm' is because I hardly use AlphaFold2. is it an average of iptm and ptm?]. I still plan to add PI-score and others. I am asking for your suggestions on what I could add/change and for your understanding. I will eventually make the repository available on github.

Cheers
Xyl

protein prediction alphafold complex

0 answers

No answers yet.

Log in to answer this question.