How to find average read length and number of reads in a bam file using samtools in linux? I used first `samtools stats file.bam | …

I have a multi sample VCF file from whole genome sequencing and would like to generate the following table of average variant count per individual: …

Hi all, I'm trying to run soapdenovo2 to assemble genomes. Although the results are acceptable, I am confused about the process. How to understand the …

Hi, Is there a way to extract or calculate the total number of overlapping bases from a CRAM file for paired-end WGS ? If I …

I want to mine polymorphic SSRs between six varieties of a crop in order to employ them in MAS. I found the RAD PE sequences …

Hi, I would like/need to pick 1 SNP per scaffold randomly from a .vcf file and generate a new .vcf file with those SNPs. The …

Hi All, Is there any way to identify the Loss of heterozygosity region from the blood and tumor snv vcf files? Or any cut-off for …

Hi friends I want to calculate average of read count / coverage for all genes, I mean creating a list which shows number of aligned …

Hi, I try to assembly my Lactobacillus genome in HGAP.3 using SMRTPortal. I set genome size about 3000000 bp and use coverage at 15x. I …

<p>I have a VCF file and I wanted to get only the count for insertion and deletions identified in the VCF. Is there any way …