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ROSE superenhancer labels

Hello, I am using ROSE to analyze superenhancers in my ChIP-Seq data. I was wondering if someone who is experienced in using ROSE could help me with a seemingly simply query please.

One of the outputs from ROSE is a "hockey stick plot" which plots all enhancers on a scatterplot, with superenhancers classified as those above the inflexion point (see attached image).

My question is: if I wanted to label superenhancers on this plot (e.g. the highest ranked superenhancer) how would I do this? What I want to do is similar to the attached image.

Thank you!

Image of hockey stick plot with labelled superenhancers

rose chip-seq
• 1,304 views • link
updated by Ram Ram • written by os306 • os306

Hi, Can you tell me how this graph was generated?

I encountered this problem when running ROSE, Does you know how to solve it? Thanks very much for your help.

Traceback (most recent call last):
File "ROSE_main.py", line 484, in
main()
File "ROSE_main.py", line 336, in main
startDict = ROSE_utils.makeStartDict(annotFile)
File "/Users/liurui/ROSE/ROSE_utils.py", line 168, in makeStartDict
refseqTable,refseqDict = importRefseq(annotFile)
File "/Users/liurui/ROSE/ROSE_utils.py", line 230, in importRefseq
if refseqDict.has_key(line[1]):
IndexError: list index out of range
• 0 views • link
updated by Ram Ram • written by Tao • Tao

You've already asked a question. If you continue to spam answers on existing threads, your account will be suspended.

• 0 views • link
written by Ram Ram

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