PyComplexHeatmap is a Python package to plot complex heatmap (cluster map). We present PyComplexHeatmap, an all-inclusive Python library for heatmap visualization, inspired by the ComplexHeatmap package currently available in R. PyComplexHeatmap is built upon the matplotlib library and features a versatile, modular interface that seamlessly integrates with other Python-based data science tools, such as Pandas, NumPy, and genomics tools.
As an example, the following figure can be plotted:
You can plot very complex heatmaps from data frame using python package PyComplexHeatmap: https://dingwb.github.io/PyComplexHeatmap/build/html/gallery.html
In addition, it allows you to composite multiple heatmap into one figure.
0 answers
No answers yet.
Log in to answer this question.
-
why 99% reads failed to align in mir-seq analysis?
written by mohammadhassanj
-
complex heatmap with CPM
written by biology_inform •
-
Weird behaviour - WGCNA hub analysis results in Cytoscape through CytoHubba plugin change every tim…
written by Raito92
-
Heatmap of Distance Clusters
written by genome_man •
-
What is the meaning of (-) log10(FDR) value, How to compare higher negative value to lower negative…
written by WUSCHEL
-
Convert RPKM data to read count data matrix
written by chtrgswm •
-
How would you trim this RNA-seq data
written by williamsbrian5064
-
Constructing a mean ROC curve based on 5 iterations
written by Swimming bird •
-
Collapse Clades In A Newick Tree With Average Distance To Tips < X
written by a1ultima
-
Forum: Confusion Related To A Term Probe-By-Background Interaction
written by mtyler.jason •
