what is IGV visualization lighter color variants stand for

I am recently trying to use IGV to visualize variations in vcf file, I noted some variants mark as a lighter color, what is this stand for?

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visualization vcf igv

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updated 3.4 years ago by Jorge Amigo

• written 3.4 years ago by octpus616 •

1 answer

Lighter variants are usually those with non-PASS filter

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written 3.4 years ago by Jorge Amigo

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