Download NCBI compiled protein database for specific genus
Hi,
How to download NCBI compiled protein database for specific genus ( eg. Acinetobacter baumannii) in a local computer?
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GenoMax
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saadleeshehreen
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saadleeshehreen
1 answer
Few different ways. Easiest is to use NCBI Datasets. There are multiple genomes available so go here: https://www.ncbi.nlm.nih.gov/data-hub/genome/?taxon=470
Choose the genome you want. If you don't know specifically use the one with green check mark.
And then download using the appropriate check boxes (genbank or refseq etc).
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You can also use
ncbi datasetson the the command line or use one of other programs like Kai Blin's NCBI Genome downloader: https://github.com/kblin/ncbi-genome-downloadThanks. I just wanted to download all protein sequences for this specific species. Is there any way for command line?
Command line options are mentioned above. Here is a direct link to NCBI Datasets command line tool: https://www.ncbi.nlm.nih.gov/datasets/docs/v2/download-and-install/