This is a test version of Biostars. For the public version, visit https://www.biostars.org.
ATAC Integration Help

Pretty much desperate at this point since I've had this error for a week. The output is the following after entering the following command:

integration.anchors<- FindIntegrationAnchors(
  object.list = list(Seurat_1, Seurat_2, Seurat_3),
  anchor.features = row.names(Seurat_1),
  assay = c('peaks', 'peaks', 'peaks'),
  k.filter = NA,
  reduction = "rlsi",
  dims = 2:30
)

Where Seurat_X = seurat object.

enter image description here

Can someone please help. I needed this completed days ago.

scatac-seq integration atac-seq
• 1,111 views • link
updated by Jaykumar • Jaykumar • written by bioinformatics.girl • bioinformatics.girl

hello, I am curious if you have already performed LSI dimension reduction and stored it in each object before continuing with RLSI.

• 0 views • link
written by Jaykumar • Jaykumar

0 answers

No answers yet.

Log in to answer this question.

More posts like this