is this good atac seq counts

Dear guys,

Below is the ATAC seq counts by featureCounts, Is it good or not so good? As the assigned are much less than unassigned...

Thanks a lot!

Assigned        944998
Unassigned_Unmapped     0
Unassigned_Read_Type    0
Unassigned_Singleton    0
Unassigned_MappingQuality       0
Unassigned_Chimera      0
Unassigned_FragmentLength       0
Unassigned_Duplicate    0
Unassigned_MultiMapping 14625782
Unassigned_Secondary    0
Unassigned_NonSplit     0
Unassigned_NoFeatures   51415276
Unassigned_Overlapping_Length   0
Unassigned_Ambiguity    250

atac-seq

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updated 3.4 years ago by Ram

• written 3.4 years ago by alwayshope •

I've seen better, lets say it like this. Lots of unassigned reads, can indicate lots of noise. Check on a genome browser how data look, then you know.

• 0 views • link

written 3.4 years ago by ATpoint

0 answers

No answers yet.

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