How to obtain independent introns bed file from gtf
I have installed gtftools from conda. I have been using gtftools to get independent introns bed file from ensembl S pombe gtf using the following command
gtftools -d independent_introns.bed Schizosaccharomyces_pombe.ASM294v2.51.gtf
But bed file is empty and it is also not giving any error.
Please help me with this.
Thank you
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archanaverma433 •
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1 answer
You don't need specialized tools other than awk and bedtools. See Get intronic and intergenic sequences based on gff file
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