GATK gCNV contig ploidy priors table

Hello,

I am trying to run the gCNV tool from GATK and in that step for running the DetermineGermlineContigPloidy, it requires a contig ploidy priors table.

What is this table in simple terms?

How can I make this table?

Please help.

Thanks

ngs cnv gatk.gcnv calling variant

• 1,407 views • link

written 3.5 years ago by adarsh •

I believe the following thread will be useful, if anybody is searching for the same

https://gatk.broadinstitute.org/hc/en-us/community/posts/360074399831-What-is-contig-ploidy-priors-table-and-how-to-make-it-

• 0 views • link

written 3.4 years ago by adarsh •

0 answers

No answers yet.

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