Create a new seurat object using one cluster identified in a previous seurat object
Hello, I would like to create a separated seurat object using only 1 cluster previous identified in the same seurat object to explore different subtypes on NK cell phenotypes inside this cluster. I am not fcompletely familiar with R and I anot sure what code should I use. Can anyone help me? Thank you
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Ribo •
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Fernanda •
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Fernanda •
1 answer
You can subset your data based on any meta.data column. For example, if your clusters are stored in my_clusters column, run:
new_seurat_object <- original_seurat_object %>% subset(my_clusters == 'cluster_name')
Similarly, you can subset your data based on cell identity:
new_seurat_object <- original_seurat_object %>% subset(idents = 'cluster_name')
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