What's the state-of-the-art for gene calling in eukaryotic transcriptomics?
In the past I have used transDecoder but haven't really been able to find other tools that can get good gene models from eukaryotic transcripts assembled from metatranscriptomics data. MetaEuk is my go to for eukaryotic gene modeling but that’s for genomes.
Is transDecoder still the industry standard in 2023?
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