It any raw fasta/fastq raw files of scATAC-seq or scRNA-seq data pbulicly available?
Dear all,
I would like to learn the data analysis pipline of the scATAC-seq or the scRNA-seq. I wish I could use the data deposited in GEO database as the beginning. However, the data analysis software, such as STAT and bowtie2, which are used to map the reads to the reference genome, use read.fq files as the input. I wonder whether these read.fq files could also be deposited somewhere? How can I find data to test these mapping software?
Thank you in advance!
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GenoMax
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sunyeping •
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sunyeping •
1 answer
While there are many datasets available via NCBI SRA you can get example data from 10x by visiting https://www.10xgenomics.com/resources/datasets. You will need to register.
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